Sherry, E., and Johnson, C.J. 1999. The forgotten forest: revisiting the forestland allocation strategy. The Forestry Chronicle 75:919-927.

Johnson, C.J., Parker, K.L., and Heard, D.C. 2000. Feeding site selection by woodland caribou in northcentral British Columbia. Rangifer Special Issue No. 12: 159-172.

Johnson, C.J., Parker, K.L., and Heard, D.C. 2001. Foraging across a variable landscape: behavioural decisions made by woodland caribou at multiple spatial scales. Oecologia 127:590-602 (The original article is available on LINK http://link.springer.de/ see DOI 10.1007/s004420000573).

Johnson, C.J., Heard, D.C., and Parker, K.L. 2002. Expectations and realities of GPS animal location collars: results of three years in the field. Wildlife Biology 8:153-159.

Johnson, C.J., Parker, K.L., Heard, D.C., and Gillingham, M.P. 2002. Movement parameters of ungulates and scale-specific responses to the environment. Journal of Animal Ecology 71:225-235.

Johnson, C.J., Parker, K.L., Heard, D.C., and Gillingham, M.P. 2002. A multi-scale behavioral approach to understanding the movements of woodland caribou. Ecological Applications 12:1840-1860.

Johnson, C.J., Alexander, N.D., Wheate, R.D., and Parker, K.L. 2003. Characterising woodland caribou habitat in sub-boreal and boreal forests. Forest Ecology and Management 180:241-248.

Hawley, A.W.L., Sherry, E.E, and Johnson, C.J. 2004. A biologist’s perspective on amalgamating traditional environmental knowledge and resource management. British Columbia Journal of Ecosystems and Management 5:36-50

Johnson, C.J., and Boyce, M.S. 2004. A quantitative approach for regional environmental assessment: application of a habitat-based population viability analysis to wildlife of the Canadian central Arctic. Canadian Environmental Assessment Agency Research and Development Monograph Series, http://www.ceaa-acee.gc.ca/015/0002/index_e.htm

Johnson, C.J., Boyce, M.S., Mulders, R., Gunn, A., Gau, R.J., Cluff, H.D., and Case, R.L. 2004. Quantifying patch distribution at multiple spatial scales: applications to wildlife-habitat models. Landscape Ecology 19:869-882.

Johnson, C.J., Boyce, M.S., Schwartz, C.C., and Haroldson, M.A. 2004. Modelling survival: application of the Anderson-Gill model to Yellowstone grizzly bear. Journal of Wildlife Management 68:966-978.

Johnson, C.J. and Gillingham, M.P. 2004. Mapping uncertainty: sensitivity of wildlife habitat ratings to variation in expert opinion. Journal of Applied Ecology 41:1032-1041.

Johnson, C.J., Seip, D.R., and Boyce, M.S. 2004. A quantitative approach to conservation planning: Using resource selection functions to identify important habitats for mountain caribou. Journal of Applied Ecology 41:238-251.

Johnson, C.J., Parker, K.L., Heard, D.C., and Seip, D.R. 2004. Movements, foraging habits and habitat use strategies of northern woodland caribou: implications for forest practices. British Columbia Journal of Ecosystems and Management 5:22-35.

Johnson, C.J., Boyce, M.S., Case, R.L., Cluff, H.D., Gau, R.J., Gunn, A., and Mulders, R.. 2005. Quantifying the cumulative effects of human developments: a regional environmental assessment for sensitive Arctic wildlife. Wildlife Monograph 160.

Nielsen, S.E., Johnson, C.J., Heard, D.C., and Boyce, M.S. 2005. Modelling species occurrence and abundance: does probability of occurrence reflect population density? Ecography 28:197-208.

Johnson, C.J., and Gillingham, M.P. 2005. An evaluation of mapped species distribution models used for conservation planning. Environmental Conservation 32:1-12.

Johnson, C.J., Nielsen, S.E., Merrill, E.H., McDonald, T.L. and Boyce, M.S. 2006. Resource selection functions based on use-availability data: theoretical motivation and evaluation methods Journal of Wildlife Management 70:347-357..

Johnson, C.J., Parker, K.L., Heard, D.C., and Gillingham, M.P. 2006. Unrealistic animal movement rates as behavioural bouts: a reply. Journal of Animal Ecology 75:303-308.

Seip, D.R., Johnson, C.J., and Watts G. 2007. Displacement of mountain caribou from winter habitat by snowmobiles. Journal of Wildlife Management 71:1539-1544..

Hurley, M.V., Rapaport, E.K., and Johnson, C.J. 2007. A spatial analysis of moose-vehicle collisions in Mount Revelstoke and Glacier National Parks, Canada. Alces 43:79-100.

Johnson, C.J., and Gillingham, M.P. 2008. Sensitivity of species distribution models to imprecise data and model design. Ecological Modelling 213:143-155..

Johnson, C.J., and Seip, D.R. 2008. Relationship between resource selection, distribution, and abundance for woodland caribou: a test with implications to theory and conservation. Population Ecology 50:145-157.

Hurley, M.V., Rapaport, E.K., and Johnson, C.J. 2009. Utility of expert-based knowledge for predicting wildlife-vehicle collisions. Alces 73:278-286.

Sykes, G.E., Johnson, C.J., and Shrimpton, J.M.  2009. Temperature and flow effects on migration timing of chinook salmon smolts. Transactions of American Fisheries Society 138:1252-1265.

Wheatley, M., and Johnson, C.J. 2009. Factors limiting our understanding of ecological scale. Ecological Complexity 6:150-159.